Package: sNPLS 1.0.40
sNPLS: NPLS Regression with L1 Penalization
Tools for performing variable selection in three-way data using N-PLS in combination with L1 penalization, Selectivity Ratio and VIP scores. The N-PLS model (Rasmus Bro, 1996 <doi:10.1002/(SICI)1099-128X(199601)10:1%3C47::AID-CEM400%3E3.0.CO;2-C>) is the natural extension of PLS (Partial Least Squares) to N-way structures, and tries to maximize the covariance between X and Y data arrays. The package also adds variable selection through L1 penalization, Selectivity Ratio and VIP scores.
Authors:
sNPLS_1.0.40.tar.gz
sNPLS_1.0.40.zip(r-4.7)sNPLS_1.0.40.zip(r-4.6)sNPLS_1.0.40.zip(r-4.5)
sNPLS_1.0.40.tgz(r-4.6-any)sNPLS_1.0.40.tgz(r-4.5-any)
sNPLS_1.0.40.tar.gz(r-4.7-any)sNPLS_1.0.40.tar.gz(r-4.6-any)
sNPLS_1.0.40.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
sNPLS/json (API)
| # Install 'sNPLS' in R: |
| install.packages('sNPLS', repos = c('https://david-hervas.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/david-hervas/snpls/issues
- bread - Bread data
Last updated from:373054a149. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 128 | ||
| source / vignettes | OK | 206 | ||
| linux-release-x86_64 | NOTE | 142 | ||
| macos-release-arm64 | NOTE | 73 | ||
| macos-oldrel-arm64 | NOTE | 78 | ||
| windows-devel | NOTE | 72 | ||
| windows-release | NOTE | 68 | ||
| windows-oldrel | NOTE | 85 | ||
| wasm-release | OK | 104 |
Exports:auroccv_fitcv_snplsga_snplsrepeat_cvsNPLSSR
Dependencies:beeswarmcliclickRcodetoolscpp11crayondigestfarverFNNforeachfuturefuture.applyGAggplot2ggrepelglobalsgluegtableisobanditeratorskernlabKernSmoothkslabelinglatticelifecyclelistenvMASSMatrixmclustmgcvmulticoolmvtnormnlmeparallellypbapplypracmapROCR6RColorBrewerRcppRcppArmadillorlangS7scalesstringdistvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| AUC for sNPLS-DA model | auroc |
| Bread data | bread |
| Coefficients from a sNPLS model | coef.sNPLS |
| Internal function for 'cv_snpls' | cv_fit |
| Cross-validation for a sNPLS model | cv_snpls |
| Fitted method for sNPLS models | fitted.sNPLS |
| Genetic Algorithm for selection of hyperparameter values | ga_snpls |
| Internal function for 'plot.sNPLS' | plot_T |
| Internal function for 'plot.sNPLS' | plot_time |
| Internal function for 'plot.sNPLS' | plot_U |
| Internal function for 'plot.sNPLS' | plot_variables |
| Internal function for 'plot.sNPLS' | plot_Wj |
| Internal function for 'plot.sNPLS' | plot_Wk |
| Plot cross validation results for sNPLS objects | plot.cvsNPLS |
| Density plot for repeat_cv results | plot.repeatcv |
| Plots for sNPLS model fits | plot.sNPLS |
| Predict for sNPLS models | predict.sNPLS |
| Repeated cross-validation for sNPLS models | repeat_cv |
| R-matrix from a sNPLS model fit | Rmatrix |
| Fit a sNPLS model | sNPLS |
| Compute Selectivity Ratio for a sNPLS model | SR |
| Summary for sNPLS models | summary.sNPLS |
| Unfolding of three-way arrays | unfold3w |
